miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|83910430|gb|DW112510.1|DW112510 CGGGGATGCATGCACTAGGAATCTTCCTCCGATTCTACACCTCAAGCAACGAATATTGATTTCAGGGTGCATCGCTTTCG
CCGGTCGCTGTATTTCTCCGTAGATCTATACGGAAATTGAGCATTTGCTCTGAGAGAGATGTCTGCTGGGTTTGGGGAAG
TGCCAAACAGGTCACCCCAATCCCCATCTTGTTCAAACCCTAACAATTCCAACAATGGCGATCCAGGAAACTTTGAATGC
AACATATGCTTTGATTTAGCTCAAGATCCAATCGTGACTTTATGTGGTCACCTCTTTTGCTGGCCATGCCTTTACAAATG
GCTCCACATTCATTCACATTCACAAGAATGCCCAGTTTGTAAAGCCCTAATTCAAGAAGAAAAGTTAGTACCTTTATATG
GAAGAGGCAAAAACTCAACAGACCCAAGATCAAAGTCAGTTCCAGGTGTCGAGATTCCACATCGGCCGCCAGGTCAGCGA
CCGGAAACCGCCCCTCCACCAGACAGAAACGCATTCCCTCAACATGGATTTGGATTAATGGGTGGTTTTGGGCCTGCAAT
GACTGCAAGTTTTGGGAATTTTACTTTCTCATTTGGTGGGTTGATTCCATCTTTCTTTAATGTTCAAATGCATGCTTTCA
CTGGTCCTCAGATGTATGGAAATGGTGGTGGTGGTGGTGGAGCTGTTCATGGTTTTAACTATGGCGGCNATCATCATCAT
CATCATCATGGACATGGAGGCCATCAGCAGAGAGGTCATCACCATGAAACA




Most similar to sp|Q09463|RNF5_CAEEL

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis
           elegans GN=rnf-5 PE=1 SV=1
          Length = 235

 Score =  129 bits (325), Expect = 2e-29
 Identities = 68/131 (51%), Positives = 83/131 (63%), Gaps = 2/131 (1%)
 Frame = +1

Query: 232 FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHIHSHSQECPVCKALIQEEKLVPLYGRGK 411
           FECNIC D A+D +V+LCGHLFCWPCL +WL    ++Q CPVCK+ I   K+VP+YGRG 
Sbjct: 24  FECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRGG 83

Query: 412 NSTDPRSKSVPGVEIPHRPPGQRPETAPPPDRNAFPQHG--FGLMGGFGPAMTASFGNFT 585
           +S+DPR K      +P RP GQR E  PPP   A    G   G+MGG GP +  SFG  T
Sbjct: 84  DSSDPRKK------VPPRPKGQRSE--PPPQSFAGFNWGGDGGMMGGGGPNVHFSFGIGT 135

Query: 586 FSFGGLIPSFF 618
            +  GL P  F
Sbjct: 136 VN--GLFPLMF 144